Cookies help us display personalized product recommendations and ensure you have great shopping experience.

By using this site, you agree to the Privacy Policy and Terms of Use.
Accept
SmartData CollectiveSmartData Collective
  • Analytics
    AnalyticsShow More
    sales and data analytics
    How Data Analytics Improves Lead Management and Sales Results
    9 Min Read
    data analytics and truck accident claims
    How Data Analytics Reduces Truck Accidents and Speeds Up Claims
    7 Min Read
    predictive analytics for interior designers
    Interior Designers Boost Profits with Predictive Analytics
    8 Min Read
    image fx (67)
    Improving LinkedIn Ad Strategies with Data Analytics
    9 Min Read
    big data and remote work
    Data Helps Speech-Language Pathologists Deliver Better Results
    6 Min Read
  • Big Data
  • BI
  • Exclusive
  • IT
  • Marketing
  • Software
Search
© 2008-25 SmartData Collective. All Rights Reserved.
Reading: Clinical Reporting with R
Share
Notification
Font ResizerAa
SmartData CollectiveSmartData Collective
Font ResizerAa
Search
  • About
  • Help
  • Privacy
Follow US
© 2008-23 SmartData Collective. All Rights Reserved.
SmartData Collective > Business Intelligence > Clinical Reporting with R
Business Intelligence

Clinical Reporting with R

DavidMSmith
DavidMSmith
4 Min Read
SHARE

One of the main goals of analyzing clinical data is to produce a report. (What, you thought it was to make the world a better place?) The R Project has, of course, all the tools you need to perform the statistical analysis, calculate the tables of results, and present conclusions graphically. But how can you assemble all of that into a report that someone can, you know, read?

You could go the cut-and-paste route: write the text in Word, export the data from R to format the tables in Excel, dress up the saved charts in Photoshop. But that’s a complex, manual process, and manual processes can introduce errors. Worse yet, if the data ever changes, you’ve got to go through the whole process again to update the report. That means no interim reports, and conversely, a big barrier to correcting the data and the report after it’s published.

Vanderbilt Biostatistics professor Frank Harrell has a different solution: the rreport package for R. (See an overview slide deck here.) It’s designed to produce statistical reports for clinical trials…

More Read

cloud based tools modern business
3 Essential AI And Cloud-Based Tools Modern Business Needs To Thrive
5 Ways Big Data is Fueling the Sharing Economy
Forecast Product Demand with Confidence
How IoT Can Be Connected to Business Intelligence
Walled Gardens and the Value of Innovation: Questions for Bill Franks

One of the main goals of analyzing clinical data is to produce a report. (What, you thought it was to make the world a better place?) The R Project has, of course, all the tools you need to perform the statistical analysis, calculate the tables of results, and present conclusions graphically. But how can you assemble all of that into a report that someone can, you know, read?

You could go the cut-and-paste route: write the text in Word, export the data from R to format the tables in Excel, dress up the saved charts in Photoshop. But that’s a complex, manual process, and manual processes can introduce errors. Worse yet, if the data ever changes, you’ve got to go through the whole process again to update the report. That means no interim reports, and conversely, a big barrier to correcting the data and the report after it’s published.

Vanderbilt Biostatistics professor Frank Harrell has a different solution: the rreport package for R. (See an overview slide deck here.) It’s designed to produce statistical reports for clinical trials, and is especially useful for producing interim reports for data monitoring committees (DMCs). You can use it to create a complete report document, fully automating the process of generating tables from your R analyses like this:

Rreport-table
and integrating R graphics into the document, like this:

Rreport-graphic

The rreport system is an example of literate programming: the tables and reports are interwoven into the narrative text in a single source document in the open-source LaTeX typesetting language, and the entire report can be redone, with all results recalculated and all charts regenerated from the source data, in a single step. Using LaTeX does take some getting used to — it’s not a WYSIWYG environment like Word — but does make for very attractive reports and the ability to easily typeset the Greek-laden mathematical equations so prevalent in clinical trial reports. You can download rreport from the Vanderbilt CVS repository at the link below.

Department of Biostatistics, Vanderbilt University: rreport package

Link to original post

TAGGED:r project
Share This Article
Facebook Pinterest LinkedIn
Share

Follow us on Facebook

Latest News

sales and data analytics
How Data Analytics Improves Lead Management and Sales Results
Analytics Big Data Exclusive
ai in marketing
How AI and Smart Platforms Improve Email Marketing
Artificial Intelligence Exclusive Marketing
AI Document Verification for Legal Firms: Importance & Top Tools
AI Document Verification for Legal Firms: Importance & Top Tools
Artificial Intelligence Exclusive
AI supply chain
AI Tools Are Strengthening Global Supply Chains
Artificial Intelligence Exclusive

Stay Connected

1.2kFollowersLike
33.7kFollowersFollow
222FollowersPin

You Might also Like

Open Source is Opening Data to Predictive Analytics

7 Min Read

Statistical learning with MARS

2 Min Read

Future of Open Source Survey – Results

3 Min Read

R 2.11.0 released

3 Min Read

SmartData Collective is one of the largest & trusted community covering technical content about Big Data, BI, Cloud, Analytics, Artificial Intelligence, IoT & more.

ai in ecommerce
Artificial Intelligence for eCommerce: A Closer Look
Artificial Intelligence
data-driven web design
5 Great Tips for Using Data Analytics for Website UX
Big Data

Quick Link

  • About
  • Contact
  • Privacy
Follow US
© 2008-25 SmartData Collective. All Rights Reserved.
Go to mobile version
Welcome Back!

Sign in to your account

Username or Email Address
Password

Lost your password?